Hiraku Oshima: шукати на сайті Z-Library

Ken-ichi Amano, Hiraku Oshima, Masahiro Kinoshita

Рік:

2011

Мова:

english

Файл:

PDF, 359 KB

english, 2011

Corrigendum to: ‘An efficient method for analyzing conformational properties of a polymer in solvent’ [Chem. Phys. Lett. 504 (2011) 7–12]

Журнал:

Proteins: Structure, Function, and Bioinformatics

Рік:

2011

Мова:

english

Файл:

PDF, 120 KB

english, 2011

Free-energy function for discriminating the native fold of a protein from misfolded decoys

Satoshi Yasuda, Takashi Yoshidome, Yuichi Harano, Roland Roth, Hiraku Oshima, Koji Oda, Yuji Sugita, Mitsunori Ikeguchi, Masahiro Kinoshita

Журнал:

Рік:

2011

Мова:

english

Файл:

PDF, 688 KB

english, 2011

Characterization of Experimentally Determined Native-Structure Models of a Protein Using Energetic and Entropic Components of Free-Energy Function

Mishima, Hirokazu, Yasuda, Satoshi, Yoshidome, Takashi, Oshima, Hiraku, Harano, Yuichi, Ikeguchi, Mitsunori, Kinoshita, Masahiro

Журнал:

Journal of Physical Chemistry B

Рік:

2012

Мова:

english

Файл:

PDF, 1.49 MB

english, 2012

Mouse gastric tumor models with prostaglandin E2pathway activation show similar gene expression profiles to intestinal-type human gastric cancer

Hiraku Itadani, Hiroko Oshima, Masanobu Oshima, Hidehito Kotani

Журнал:

BMC Genomics

Рік:

2009

Мова:

english

Файл:

PDF, 333 KB

english, 2009

Crucial importance of the water-entropy effect in predicting hot spots in protein–protein complexes

Oshima, Hiraku, Yasuda, Satoshi, Yoshidome, Takashi, Ikeguchi, Mitsunori, Kinoshita, Masahiro

Журнал:

Physical Chemistry Chemical Physics

Рік:

2011

Мова:

english

Файл:

PDF, 2.00 MB

english, 2011

Induction and Down-regulation of Sox17 and Its Possible Roles During the Course of Gastrointestinal Tumorigenesis

Yu–Chen Du, Hiroko Oshima, Keisuke Oguma, Takanori Kitamura, Hiraku Itadani, Takashi Fujimura, Ying–Shi Piao, Tanihiro Yoshimoto, Toshinari Minamoto, Hidehito Kotani, Makoto M. Taketo, Masanobu Oshima

Журнал:

Gastroenterology

Рік:

2009

Мова:

english

Файл:

PDF, 2.88 MB

english, 2009

Effects of sugars on the thermal stability of a protein

Журнал:

Hayashi, Tomohiko, Oshima, Hiraku, Mashima, Tsukasa, Nagata, Takashi, Katahira, Masato, Kinoshita, Masahiro

Рік:

2013

Мова:

english

Файл:

PDF, 714 KB

english, 2013

Statistical Thermodynamics for Binding of an RNA Aptamer and a Partial Peptide of a Prion Protein

Журнал:

Рік:

2014

Мова:

english

Файл:

PDF, 41 KB

english, 2014

Crucial Importance of Protein-Solvent Many-Body Correlation for Solvent-Entropy Effect in Structural Stability of a Protein

Журнал:

Рік:

2014

Мова:

english

Файл:

PDF, 62 KB

english, 2014

Effects of Sugars on the Thermal Stability of a Protein

Журнал:

Mishima, Hirokazu, Oshima, Hiraku, Yasuda, Satoshi, Amano, Ken-ichi, Kinoshita, Masahiro

Рік:

2013

Мова:

english

Файл:

PDF, 38 KB

english, 2013

Entropic release of a big sphere from a cylindrical vessel

Журнал:

Mishima, Hirokazu, Oshima, Hiraku, Yasuda, Satoshi, Amano, Ken-ichi, Kinoshita, Masahiro

Рік:

2013

Мова:

english

Файл:

PDF, 849 KB

english, 2013

Physics of Multidrug Efflux through a Biomolecular Complex

Журнал:

Oshima, Hiraku, Odagaki, Takashi

Рік:

2014

Мова:

english

Файл:

PDF, 43 KB

english, 2014

Storage capacity and retrieval time of small-world neural networks

Журнал:

Physical Review E

Рік:

2007

Мова:

english

Файл:

PDF, 189 KB

english, 2007

Changes in hydrophobic and hydrophilic hydration properties caused by raising the pressure or by lowering the temperature

Kinoshita, Masahiro, Oshima, Hiraku

Журнал:

Yasuda, Satoshi, Oshima, Hiraku, Kinoshita, Masahiro

Рік:

2014

Мова:

english

Файл:

PDF, 1.04 MB

english, 2014

Structural stability of proteins in aqueous and nonpolar environments

Журнал:

Yasuda, Satoshi, Yoshidome, Takashi, Oshima, Hiraku, Kodama, Ryota, Harano, Yuichi, Kinoshita, Masahiro

Рік:

2012

Мова:

english

Файл:

PDF, 2.85 MB

english, 2012

Effects of side-chain packing on the formation of secondary structures in protein folding

Журнал:

Mishima, Hirokazu, Oshima, Hiraku, Yasuda, Satoshi, Amano, Ken-ichi, Kinoshita, Masahiro

Рік:

2010

Мова:

english

Файл:

PDF, 2.11 MB

english, 2010

On the physics of multidrug efflux through a biomolecular complex

Журнал:

Oshima, Hiraku, Yoshidome, Takashi, Amano, Ken-ichi, Kinoshita, Masahiro

Рік:

2013

Мова:

english

Файл:

PDF, 3.38 MB

english, 2013

A theoretical analysis on characteristics of protein structures induced by cold denaturation

Журнал:

Amano, Ken-ich, Oshima, Hiraku, Kinoshita, Masahiro

Рік:

2009

Мова:

english

Файл:

PDF, 1.16 MB

english, 2009

Potential of mean force between a large solute and a biomolecular complex: A model analysis on protein flux through chaperonin system

Журнал:

Mishima, Hirokazu, Oshima, Hiraku, Yasuda, Satoshi, Kinoshita, Masahiro

Рік:

2011

Мова:

english

Файл:

PDF, 2.72 MB

english, 2011

Statistical Thermodynamics for Functionally Rotating Mechanism of the Multidrug Efflux Transporter AcrB

Журнал:

Journal of Physical Chemistry B

Рік:

2015

Мова:

english

Файл:

PDF, 502 KB

english, 2015

Essential roles of protein-solvent many-body correlation in solvent-entropy effect on protein folding and denaturation: Comparison between hard-sphere solvent and water

Журнал:

Hayashi, Tomohiko, Oshima, Hiraku, Yasuda, Satoshi, Kinoshita, Masahiro

Рік:

2015

Мова:

english

Файл:

PDF, 1.33 MB

english, 2015

Mechanism of One-to-Many Molecular Recognition Accompanying Target-Dependent Structure Formation: For the Tumor Suppressor p53 Protein as an Example

Журнал:

Journal of Physical Chemistry B

Рік:

2015

Мова:

english

Файл:

PDF, 1.32 MB

english, 2015

Theoretical Prediction of Thermal-Stability Changes upon Mutations of a Protein

Murakami, Shota, Oshima, Hiraku, Hayashi, Tomohiko, Kinoshita, Masahiro

Журнал:

Hayashi, Tomohiko, Oshima, Hiraku, Yasuda, Satoshi, Kinoshita, Masahiro

Рік:

2015

Мова:

english

Файл:

PDF, 40 KB

english, 2015

Statistical Thermodynamics of One-To-Many Molecular Recognition Accompanied by Partner-Dependent Folding: In the Case of a Tumor Suppressor Protein p53

Журнал:

Oshima, Hiraku, Hayashi, Tomohiko, Kinoshita, Masahiro

Рік:

2015

Мова:

english

Файл:

PDF, 42 KB

english, 2015

Essential Roles of Water in Actin-Myosin Binding

Журнал:

Mishima, Hirokazu, Oshima, Hiraku, Yasuda, Satoshi, Kinoshita, Masahiro

Рік:

2016

Мова:

english

Файл:

PDF, 39 KB

english, 2016

Physical Picture for Functionally Rotating Mechanism of the Multidrug Efflux Transporter AcrB

Журнал:

Oshima, Hiraku, Hayashi, Tomohiko, Kinoshita, Masahiro

Рік:

2015

Мова:

english

Файл:

PDF, 39 KB

english, 2015

Statistical Thermodynamics for Actin-Myosin Binding: The Crucial Importance of Hydration Effects

Журнал:

Рік:

2016

Мова:

english

Файл:

PDF, 893 KB

english, 2016

A highly efficient hybrid method for calculating the hydration free energy of a protein

Journal of Computational Chemistry

Журнал:

Рік:

2016

Мова:

english

Файл:

PDF, 803 KB

english, 2016

Water based on a molecular model behaves like a hard-sphere solvent for a nonpolar solute when the reference interaction site model and related theories are employed

Hayashi, Tomohiko, Oshima, Hiraku, Harano, Yuichi, Kinoshita, Masahiro

Журнал:

Journal of Physics Condensed Matter

Рік:

2016

Мова:

english

Файл:

PDF, 1.24 MB

english, 2016

Finite Memory Walk and Its Application to Small-World Network

Oshima, Hiraku, Odagaki, Takashi

Журнал:

Journal of the Physical Society of Japan

Рік:

2012

Мова:

english

Файл:

PDF, 621 KB

english, 2012

Production of novel bispyrone metabolites in the cellular slime mold Dictyostelium giganteum induced by zinc(II) ion

Nguyen, Van Hai, Kikuchi, Haruhisa, Sasaki, Hiraku, Iizumi, Kyoichi, Kubohara, Yuzuru, Oshima, Yoshiteru

Журнал:

Tetrahedron

Рік:

2017

Мова:

english

Файл:

PDF, 764 KB

english, 2017

On the physics of thermal-stability changes upon mutations of a protein

Murakami, Shota, Oshima, Hiraku, Hayashi, Tomohiko, Kinoshita, Masahiro

Журнал:

Oshima, Hiraku, Odagaki, Takashi

Рік:

2015

Мова:

english

Файл:

PDF, 3.64 MB

english, 2015

Boundary Perturbation Analysis of Complex Networks

Журнал:

Journal of the Physical Society of Japan

Рік:

2012

Мова:

english

Файл:

PDF, 890 KB

english, 2012

Generation of branching ureteric bud tissues from human pluripotent stem cells

Mae, Shin-Ichi, Ryosaka, Makoto, Toyoda, Taro, Matsuse, Kyoko, Oshima, Yoichi, Tsujimoto, Hiraku, Okumura, Shiori, Shibasaki, Aya, Osafune, Kenji

Журнал:

Biochemical and Biophysical Research Communications

Рік:

2017

Мова:

english

Файл:

PDF, 3.76 MB

english, 2017

1P-045 A Theoretical Analysis on Characteristics of Protein Structures Induced by Cold Denaturation(Protein:Property, The 47th Annual Meeting of the Biophysical Society of Japan)

Oshima, Hiraku, Yoshidome, Takashi, Amano, Ken-ichi, Kinoshita, Masahiro

Журнал:

Oshima, Hiraku, Yasuda, Satoshi, Yoshidome, Takashi, Ikeguchi, Mitsunori, Kinoshita, Masahiro

Рік:

2009

Мова:

english

Файл:

PDF, 234 KB

english, 2009

1P062 Theoretical Prediction of Hot Spots in Protein-Protein Complexes(Protein:Property,The 48th Annual Meeting of the Biophysical Society of Japan)

Журнал:

Yasuda, Satoshi, Oshima, Hiraku, Kinoshita, Masahiro

Рік:

2010

Мова:

english

Файл:

PDF, 232 KB

english, 2010

1PT154 Structural stability of a protein in aqueous and nonaqueous environments(The 50th Annual Meeting of the Biophysical Society of Japan)

Журнал:

Hayashi, Tomohiko, Oshima, Hiraku, Mashima, Tsukasa, Nagata, Takashi, Katahira, Masato, Kinoshita, Masahiro

Рік:

2012

Мова:

english

Файл:

PDF, 217 KB

english, 2012

3P114 Statistical Thermodynamics for Binding of an RNA Aptamer and a Partial Peptide of a Prion Protein(04. Nucleic acid binding proteins,Poster)

Журнал:

Oshima, Hiraku, Murakami, Shota, Kinoshita, Masahiro

Рік:

2013

Мова:

english

Файл:

PDF, 695 KB

english, 2013

3P058 Solvent-Entropy Effect in Structural Stability of a Protein : Crucial Importance of Protein-Solvent Many-Body Correlation(01A. Protein: Structure,Poster)

Журнал:

Hayashi, Tomohiko, Oshima, Hiraku, Yasuda, Satoshi, Kinoshita, Masahiro

Рік:

2013

Мова:

english

Файл:

PDF, 1.04 MB

english, 2013

2P004 Statistical thermodynamics of one-to-many molecular recognition accompanied by partner-dependent folding : in the case of p53 protein(01A. Protein:Structure,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Журнал:

Murakami, Shota, Oshima, Hiraku, Hayashi, Tomohiko, Kinoshita, Masahiro

Рік:

2014

Мова:

english

Файл:

PDF, 694 KB

english, 2014

3P057 Theoretical Prediction of Thermal-Stability Changes upon Mutations of a Protein(01A. Protein: Structure,Poster)

Журнал:

Murakami, Shota, Oshima, Hiraku, Hayashi, Tomohiko, Kinoshita, Masahiro

Рік:

2013

Мова:

english

Файл:

PDF, 1.04 MB

english, 2013

3P057 Theoretical Prediction of Thermal-Stability Changes upon Mutations of a Protein(01C. Protein: Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Журнал:

Oshima, Hiraku, Yasuda, Satoshi, Yoshidome, Takashi, Ikeguchi, Mitsunori, Kinoshita, Masahiro

Рік:

2014

Мова:

english

Файл:

PDF, 1.01 MB

english, 2014

1H1436 Crucial Importance of Water-Entropy Effect for Hot Spots in Protein-Protein Complexes(Protein: Property 2,The 49th Annual Meeting of the Biophysical Society of Japan)

Журнал:

Yasuda, Satoshi, Oshima, Hiraku, Murata, Takeshi, Kinoshita, Masahiro

Рік:

2011

Мова:

english

Файл:

PDF, 225 KB

english, 2011

3P109 Theoretical Enhancement of Structural Stability of a Membrane Protein for X-ray Crystallography(03. Membrane proteins,Poster)

Журнал:

Mishima, Hirokazu, Oshima, Hiraku, Yasuda, Satoshi, Kinoshita, Masahiro

Рік:

2013

Мова:

english

Файл:

PDF, 695 KB

english, 2013

3P024 Physical Picture for Mechanism of Conformational Rotation of Multidrug Transporter AcrB(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Журнал:

Mishima, Hirokazu, Oshima, Hiraku, Yasuda, Satoshi, Amano, Ken-ichi, Kinoshita, Masahiro

Рік:

2014

Мова:

english

Файл:

PDF, 729 KB

english, 2014

3PT116 Entropic release of a big sphere from a cylindrical vessel(The 50th Annual Meeting of the Biophysical Society of Japan)

Журнал:

Mishima, Hirokazu, Oshima, Hiraku, Yasuda, Satoshi, Amano, Ken-ichi, Kinoshita, Masahiro

Рік:

2012

Мова:

english

Файл:

PDF, 215 KB

english, 2012

3P108 On the Physics of Multidrug Efflux through a Biomolecular Complex(03. Membrane proteins,Poster)

Журнал:

Oshima, Hiraku, Amano, Ken-ichi, Kinoshita, Masahiro

Рік:

2013

Мова:

english

Файл:

PDF, 694 KB

english, 2013

1PT137 Effects of sugars on the thermal stability of proteins(The 50th Annual Meeting of the Biophysical Society of Japan)

Журнал:

Рік:

2012

Мова:

english

Файл:

PDF, 210 KB

english, 2012

Population Shift Mechanism for Partial Agonism of AMPA Receptor

Oshima, Hiraku, Re, Suyong, Sakakura, Masayoshi, Takahashi, Hideo, Sugita, Yuji

Журнал: